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#!/usr/bin/perl -w # # dbmerge2.pm # Copyright (C) 1991-2022 by John Heidemann <johnh@isi.edu> # # This program is distributed under terms of the GNU general # public license, version 2. See the file COPYING # in $dblibdir for details. # =head1 NAME dbmerge2 - merge exactly two inputs in sorted order based on the the specified columns =head1 SYNOPSIS dbmerge2 --input A.fsdb --input B.fsdb [-T TemporaryDirectory] [-nNrR] column [column...] or cat A.fsdb | dbmerge2 --input B.fsdb [-T TemporaryDirectory] [-nNrR] column [column...] =head1 DESCRIPTION Merge exactly two sorted input files, producing one sorted result. Inputs can both be specified with C<--input>, or one can come from standard input and the other from C<--input>. Inputs must have identical schemas (columns, column order, and field separators). Dbmerge2 consumes a fixed amount of memory regardless of input size. Although described above as a command line too, the command line version of dbmerge2 is not installed by default. Dbmerge2 is used primarily internal to perl; L<dbmerge(1)> is the command-line tool for user use. Warning: we do not verify that each input is actually sorted. Incorrect merge results will occur if they are not. =head1 OPTIONS General option: =over 4 =item B<--saveoutput $OUT_REF> Save output writer (for integration with other fsdb filters). =item <-T TmpDir> where to put tmp files. Also uses environment variable TMPDIR, if -T is not specified. Default is /tmp. =back Sort specification options (can be interspersed with column names): =over 4 =item B<-r> or B<--descending> sort in reverse order (high to low) =item B<-R> or B<--ascending> sort in normal order (low to high) =item B<-n> or B<--numeric> sort numerically =item B<-N> or B<--lexical> sort lexicographically =back =for comment begin_standard_fsdb_options This module also supports the standard fsdb options: =over 4 =item B<-d> Enable debugging output. =item B<-i> or B<--input> InputSource Read from InputSource, typically a file name, or C<-> for standard input, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. =item B<-o> or B<--output> OutputDestination Write to OutputDestination, typically a file name, or C<-> for standard output, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. =item B<--autorun> or B<--noautorun> By default, programs process automatically, but Fsdb::Filter objects in Perl do not run until you invoke the run() method. The C<--(no)autorun> option controls that behavior within Perl. =item B<--header> H Use H as the full Fsdb header, rather than reading a header from then input. =item B<--help> Show help. =item B<--man> Show full manual. =back =for comment end_standard_fsdb_options =head1 SAMPLE USAGE =head2 Input: File F<a.fsdb>: #fsdb cid cname 11 numanal 10 pascal File F<b.fsdb>: #fsdb cid cname 12 os 13 statistics =head2 Command: dbmerge2 --input a.fsdb --input b.fsdb cname or cat a.fsdb | dbmerge2 --input b.fsdb cname =head2 Output: #fsdb cid cname 11 numanal 12 os 10 pascal 13 statistics # | dbmerge2 --input a.fsdb --input b.fsdb cname =head1 SEE ALSO L<dbmerge(1)>, L<dbsort(1)>, L<Fsdb(3)> =cut # WARNING: This code is derived from dbmerge2.pm; that is the master copy. use Fsdb::Filter::dbmerge2; my $f = new Fsdb::Filter::dbmerge2(@ARGV); $f->setup_run_finish; # or could just --autorun exit 0; =head1 AUTHOR and COPYRIGHT Copyright (C) 1991-2022 by John Heidemann <johnh@isi.edu> This program is distributed under terms of the GNU general public license, version 2. See the file COPYING with the distribution for details. =cut 1;
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