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tabdelim_to_db
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#!/usr/bin/perl # # tabdelim_to_db.pm # Copyright (C) 2005-2007 by John Heidemann <johnh@isi.edu> # $Id: 1a976a31ff4f2b1a666224af678a0ad4ca3e47c4 $ # # This program is distributed under terms of the GNU general # public license, version 2. See the file COPYING # in $dblib for details. # =head1 NAME tabdelim_to_db - convert tab-delimited data into fsdb =head1 SYNOPSIS tabdelim_to_db <source.tabdelim >target.fsdb =head1 DESCRIPTION Converts a tab-delimited data stream to Fsdb format. The input is tab-delimited (I<not> fsdb): the first row is taken to be the names of the columns; tabs separate columns. The output is a fsdb file with a proper header and a tab field-separator. =for comment begin_standard_fsdb_options This module also supports the standard fsdb options: =over 4 =item B<-d> Enable debugging output. =item B<-i> or B<--input> InputSource Read from InputSource, typically a file name, or C<-> for standard input, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. =item B<-o> or B<--output> OutputDestination Write to OutputDestination, typically a file name, or C<-> for standard output, or (if in Perl) a IO::Handle, Fsdb::IO or Fsdb::BoundedQueue objects. =item B<--autorun> or B<--noautorun> By default, programs process automatically, but Fsdb::Filter objects in Perl do not run until you invoke the run() method. The C<--(no)autorun> option controls that behavior within Perl. =item B<--help> Show help. =item B<--man> Show full manual. =back =for comment end_standard_fsdb_options =head1 SAMPLE USAGE =head2 Input: name email test1 Tommy Trojan tt@usc.edu 80 Joe Bruin joeb@ucla.edu 85 J. Random jr@caltech.edu 90 =head2 Command: tabdelim_to_db =head2 Output: #fsdb -Ft name email test1 Tommy Trojan tt@usc.edu 80 Joe Bruin joeb@ucla.edu 85 J. Random jr@caltech.edu 90 # | dbcoldefine name email test1 =head1 SEE ALSO L<Fsdb>. =cut # WARNING: This code is derived from tabdelim_to_db.pm; that is the master copy. use Fsdb::Filter::tabdelim_to_db; my $f = new Fsdb::Filter::tabdelim_to_db(@ARGV); $f->setup_run_finish; # or could just --autorun exit 0; =head1 AUTHOR and COPYRIGHT Copyright (C) 1991-2008 by John Heidemann <johnh@isi.edu> This program is distributed under terms of the GNU general public license, version 2. See the file COPYING with the distribution for details. =cut 1;
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